I apply computational techniques to analyze tissue samples images. I extract meaningful information from different modalities (i.e. histology, imaging technique such as mueller polarimetry) and cross-reference them, helping in the understanding and diagnosis of diseases across mutiple levels.
I create medical data visualization tools through user-friendly GUI-based python or web-based applications, allowing healthcare professionals and other researchers to interactively explore and interpret complex medical datasets.
I measure and analyze various features, such as intensities, shapes, textures, and spatial relationships within the images to identify pattern in images. This allows to characterize structures such as diseases in medical images.
Jan, 2025
A web-based application to navigate and visualize previously registered histological and polarimetric data
(link)
Dec, 2023
I published a python and matlab-based codebase allowing to register histological images with polarimetric images with minical user interactions, and to quantify the polarimetric parameters in different brain regions
(link)
Mar, 2023
I published a python and matlab-based codebase allowing to analyze the effect of various conditions (such as formalin fixation, freezing, etc...) on brain samples over time
(link)
Gros, É., Rodríguez-Núñez, O., Moriconi, S., McKinley, R., Hewer, E., Vassella, E., Schucht, P., Novikova, T., Hahne C., & Maragkou, T. (2025). Alignment of Histological and Polarimetric Large-Scale Imaging for Brain Tissue Characterization. Submitted to NeuroImage: Reports.
Gros, É., Rodríguez-Núñez, O., Felger, L., Moriconi, S., McKinley, R., Pierangelo, A., Novikova, T., Vassella, E., Schucht, P., Hewer, E., & Maragkou, T. (2024). Characterization of Polarimetric Properties in Various Brain Tumor Types Using Wide-Field Imaging Mueller Polarimetry. IEEE TMI. https://doi.org/10.1109/TMI.2024.3413288.
Moriconi, S., Rodríguez-Núñez, O., Gros, É., Felger, L., Maragkou, T., Hewer, E., Pierangelo, A., Novikova, T., Schucht, P., & McKinley, R. (2024). Near-real-time Mueller polarimetric image processing for neurosurgical intervention. International Journal of Computer Assisted Radiology and Surgery. https://doi.org/10.1007/s11548-024-03090-6.
Gros, É., Rodríguez-Núñez, O., Felger, L., Moriconi, S., McKinley, R., Pierangelo, A., Novikova, T., Vassella, E., Schucht, P., Hewer, E., & Maragkou, T. (2023). Effects of formalin fixation on polarimetric properties of brain tissue: fresh or fixed? In Neurophotonics (Vol. 10, Issue 02). SPIE-Intl Soc Optical Eng. https://doi.org/10.1117/1.nph.10.2.025009.
Felger, L., Rodríguez-Núñez, O., Gros, É., Maragkou, T., McKinley, R., Moriconi, S., Murek, M., Zubak, I., Novikova, T., Pierangelo, A., & Schucht, P. (2023). Robustness of the wide-field imaging Mueller polarimetry for brain tissue differentiation and white matter fiber tract identification in a surgery-like environment: an ex vivo study. In Biomedical Optics Express (Vol. 14, Issue 5, p. 2400). Optica Publishing Group. https://doi.org/10.1364/boe.486438.
Degree pursued: Ph.D. in cellular and biomedical sciences
BSc. and MSc. in Life Sciences Engineering
Obtention of the Novartis Scholarhship for excellence